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Awesome Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
danielecook/Awesome-Bioinformatics
#awesome
#awesome-list
#bioinformatics
- List stars
- 4,329
- README repos
- 132
- Indexed repos
- 127
- List commits
- 273
- Forks
- 742
- Open issues
- 46
Tracked list growth
GitHub stars and default-branch commits for danielecook/Awesome-Bioinformatics.
Latest scan 2026-10-22 10:49
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GitHub starsCommits history
Default branch commits
Latest repo push 2026-10-22
wireservice/csvkit
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
- Updated
- 2026-09-21
- Lists
- 3 list mentions
- First commit
- 2011-04-01
- License
- MIT
- Issues
- 49 open
6,416
stars
- Forks
- 697
- Commits
- 2,085 commits
- Star growth, last 7 days
- +1 0.0%
- Commit velocity, last 7 days
- 0 0.0%
lh3/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
GitHub topics
- Updated
- 2026-05-19
- Lists
- 1 list mention
- First commit
- 2017-04-05
- License
- NOASSERTION
- Issues
- 79 open
2,258
stars
- Forks
- 480
- Commits
- 1,224 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
AI dev
GitHub topics
- Updated
- 2026-10-06
- Lists
- 1 list mention
- First commit
- 2015-08-04
- License
- GPL-3.0
- Issues
- 301 open
1,495
stars
- Forks
- 693
- Commits
- 7,141 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
hail-is/hail
Cloud-native genomic dataframes and batch computing
AI dev
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2015-07-24
- License
- MIT
- Issues
- 399 open
1,080
stars
- Forks
- 266
- Commits
- 12,281 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
- Updated
- 2026-10-15
- Lists
- 1 list mention
- First commit
- 2009-08-13
- License
- MIT
- Issues
- 270 open
911
stars
- Forks
- 304
- Commits
- 2,469 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
dellytools/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
GitHub topics
- Updated
- 2026-10-14
- Lists
- 1 list mention
- First commit
- 2013-11-15
- License
- BSD-3-Clause
- Issues
- 41 open
538
stars
- Forks
- 139
- Commits
- 1,577 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
mdshw5/pyfaidx
Efficient pythonic random access to fasta subsequences
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2013-09-12
- License
- NOASSERTION
- Issues
- 3 open
489
stars
- Forks
- 80
- Commits
- 938 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
brentp/cyvcf2
cython + htslib == fast VCF and BCF processing
- Updated
- 2026-09-10
- Lists
- 1 list mention
- First commit
- 2015-08-12
- License
- MIT
- Issues
- 51 open
450
stars
- Forks
- 79
- Commits
- 552 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
openvax/pyensembl
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
AI dev
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2014-04-14
- License
- Apache-2.0
- Issues
- 4 open
410
stars
- Forks
- 74
- Commits
- 803 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
daler/pybedtools
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
- Updated
- 2026-08-26
- Lists
- 1 list mention
- First commit
- 2010-05-14
- License
- NOASSERTION
- Issues
- 17 open
330
stars
- Forks
- 108
- Commits
- 1,899 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
daler/gffutils
GFF and GTF file manipulation and interconversion
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2011-09-18
- License
- MIT
- Issues
- 22 open
321
stars
- Forks
- 82
- Commits
- 768 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
adamewing/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
AI dev
- Updated
- 2026-08-05
- Lists
- 1 list mention
- First commit
- 2012-05-10
- License
- MIT
- Issues
- 42 open
253
stars
- Forks
- 87
- Commits
- 647 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
cgat-developers/ruffus
CGAT-ruffus is a lightweight python module for running computational pipelines
- Updated
- 2026-10-16
- Lists
- 1 list mention
- First commit
- 2009-04-29
- License
- MIT
- Issues
- 27 open
174
stars
- Forks
- 34
- Commits
- 1,317 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%