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Awesome List
A curated list of awesome Bioinformatics libraries and software.
GitHub stars and default-branch commits for danielecook/Awesome-Bioinformatics.
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Official git repository for Biopython (originally converted from CVS)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Accelerated BLAST compatible local sequence aligner.
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.