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Awesome Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
danielecook/Awesome-Bioinformatics
#awesome
#awesome-list
#bioinformatics
- List stars
- 4,329
- README repos
- 132
- Indexed repos
- 127
- List commits
- 273
- Forks
- 742
- Open issues
- 46
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Latest scan 2026-10-22 10:49
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shenwei356/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Stack
GitHub topics
- Updated
- 2026-10-19
- Lists
- 1 list mention
- First commit
- 2016-02-28
- License
- MIT
- Issues
- 19 open
1,605
stars
- Forks
- 189
- Commits
- 921 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
seqan/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
GitHub topics
- Updated
- 2026-10-17
- Lists
- 1 list mention
- First commit
- 2017-03-17
- License
- NOASSERTION
- Issues
- 33 open
465
stars
- Forks
- 89
- Commits
- 7,116 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
OpenGene/AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Stack
GitHub topics
- Updated
- 2020-05-14
- Lists
- 1 list mention
- First commit
- 2015-08-04
- License
- MIT
- Issues
- 28 open
214
stars
- Forks
- 50
- Commits
- 200 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
divonlan/genozip
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
- Updated
- 2026-10-19
- Lists
- 1 list mention
- First commit
- 2019-12-15
- License
- NOASSERTION
- Issues
- 0 open
191
stars
- Forks
- 14
- Commits
- 3,326 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
telatin/seqfu2
:rocket: seqfu - Sequece Fastx Utilities
AI dev
GitHub topics
- Updated
- 2026-10-13
- Lists
- 1 list mention
- First commit
- 2020-11-26
- License
- GPL-3.0
- Issues
- 0 open
132
stars
- Forks
- 10
- Commits
- 785 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
mdshw5/fastqp
Simple FASTQ quality assessment using Python
GitHub topics
- Updated
- 2026-02-24
- Lists
- 1 list mention
- First commit
- 2013-09-23
- License
- MIT
- Issues
- 13 open
111
stars
- Forks
- 15
- Commits
- 194 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
Rbfinch/grepq
quickly filter fastq files by matching sequences to a set of regex patterns
GitHub topics
- Updated
- 2026-10-18
- Lists
- 1 list mention
- First commit
- 2024-11-03
- License
- MIT
- Issues
- 5 open
60
stars
- Forks
- 2
- Commits
- 333 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%