Awesome Bioinformatics

Accelerated BLAST compatible local sequence aligner.

SPAdes Genome Assembler

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

A fast and sensitive gapped read aligner

A single molecule sequence assembler for genomes large and small.

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Create an index on a compressed text file

Mummer alignment tool

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

Structural variant and indel caller for mapped sequencing data

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

C++ API & command-line toolkit for working with BAM data

Bayesian haplotype-based mutation calling

No description.

Scalable gVCF merging and joint variant calling for population sequencing projects

A powerful toolset for genome arithmetic.

SKESA assembler

A software for calculating telomere length