Bayesian haplotype-based genetic polymorphism discovery and genotyping.
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C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
structural variant calling and genotyping with existing tools, but, smoothly.
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
annotate a VCF with other VCFs/BEDs/tabixed files
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
