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GRIDSS: the Genomic Rearrangement IDentification Software Suite
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
SPAdes Genome Assembler
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
