C++ API & command-line toolkit for working with BAM data
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Tools (written in C using htslib) for manipulating next-generation sequencing data
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
bedtools - the swiss army knife for genome arithmetic
tools for adding mutations to existing .bam files, used for testing mutation callers
A bam toolbox
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
