A bam toolbox
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bedtools - the swiss army knife for genome arithmetic
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
C++ API & command-line toolkit for working with BAM data
Tools (written in C using htslib) for manipulating next-generation sequencing data
