tools for adding mutations to existing .bam files, used for testing mutation callers
Appears on
Quick read
Latest capture 2026-10-22 09:37
Archive status reflects the last catalog sync, not a maintenance assessment. Check recent releases, issue responses, and fit for your project with the repository shortlisting checklist.
4 paths
Agent instructions and tool configuration found in this repository.
Claude Code 4
1 observed capture since 2026-10-22. Observed captures are shown by default.
Stars from first capture 0
Observed captures only
All tracked data
Observed snapshots
Observed snapshots
Nearest indexed repositories by embedding similarity.
Tools (written in C using htslib) for manipulating next-generation sequencing data
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
Automate common sam & bam conversions
C++ API & command-line toolkit for working with BAM data
lumpy: a general probabilistic framework for structural variant discovery
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
