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Awesome Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
danielecook/Awesome-Bioinformatics
#awesome
#awesome-list
#bioinformatics
- List stars
- 4,329
- README repos
- 132
- Indexed repos
- 127
- List commits
- 273
- Forks
- 742
- Open issues
- 46
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Latest scan 2026-10-22 10:49
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biopython/biopython
Official git repository for Biopython (originally converted from CVS)
GitHub topics
- Updated
- 2026-10-22
- Lists
- 2 list mentions
- First commit
- 1999-12-08
- License
- NOASSERTION
- Issues
- 634 open
5,241
stars
- Forks
- 1,976
- Commits
- 16,369 commits
- Star growth, last 7 days
- +6 +0.1%
- Commit velocity, last 7 days
- +3 0.0%
scverse/scanpy
Single-cell analysis in Python. Scales to >100M cells.
GitHub topics
- Updated
- 2026-10-22
- Lists
- 1 list mention
- First commit
- 2017-01-29
- License
- BSD-3-Clause
- Issues
- 557 open
2,592
stars
- Forks
- 800
- Commits
- 3,912 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
AI dev
GitHub topics
- Updated
- 2026-10-06
- Lists
- 1 list mention
- First commit
- 2015-08-04
- License
- GPL-3.0
- Issues
- 301 open
1,495
stars
- Forks
- 693
- Commits
- 7,141 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
hail-is/hail
Cloud-native genomic dataframes and batch computing
AI dev
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2015-07-24
- License
- MIT
- Issues
- 399 open
1,080
stars
- Forks
- 266
- Commits
- 12,281 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
- Updated
- 2026-10-15
- Lists
- 1 list mention
- First commit
- 2009-08-13
- License
- MIT
- Issues
- 270 open
911
stars
- Forks
- 304
- Commits
- 2,469 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
insitro/redun
Yet another redundant workflow engine
GitHub topics
- Updated
- 2026-07-17
- Lists
- 1 list mention
- First commit
- 2021-10-08
- License
- Apache-2.0
- Issues
- 34 open
605
stars
- Forks
- 53
- Commits
- 511 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
mdshw5/pyfaidx
Efficient pythonic random access to fasta subsequences
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2013-09-12
- License
- NOASSERTION
- Issues
- 3 open
489
stars
- Forks
- 80
- Commits
- 938 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
cokelaer/bioservices
Access to Biological Web Services from Python.
- Updated
- 2026-06-12
- Lists
- 1 list mention
- First commit
- 2012-11-28
- License
- NOASSERTION
- Issues
- 5 open
347
stars
- Forks
- 70
- Commits
- 1,521 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
mdshw5/fastqp
Simple FASTQ quality assessment using Python
GitHub topics
- Updated
- 2026-02-24
- Lists
- 1 list mention
- First commit
- 2013-09-23
- License
- MIT
- Issues
- 13 open
111
stars
- Forks
- 15
- Commits
- 194 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%