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Awesome Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
danielecook/Awesome-Bioinformatics
#awesome
#awesome-list
#bioinformatics
- List stars
- 4,329
- README repos
- 132
- Indexed repos
- 127
- List commits
- 273
- Forks
- 742
- Open issues
- 46
Tracked list growth
GitHub stars and default-branch commits for danielecook/Awesome-Bioinformatics.
Latest scan 2026-10-22 10:49
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GitHub starsCommits history
Default branch commits
Latest repo push 2026-10-22
wireservice/csvkit
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
- Updated
- 2026-09-21
- Lists
- 3 list mentions
- First commit
- 2011-04-01
- License
- MIT
- Issues
- 49 open
6,416
stars
- Forks
- 697
- Commits
- 2,085 commits
- Star growth, last 7 days
- +1 0.0%
- Commit velocity, last 7 days
- 0 0.0%
scverse/scanpy
Single-cell analysis in Python. Scales to >100M cells.
GitHub topics
- Updated
- 2026-10-22
- Lists
- 1 list mention
- First commit
- 2017-01-29
- License
- BSD-3-Clause
- Issues
- 557 open
2,592
stars
- Forks
- 800
- Commits
- 3,912 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
AI dev
GitHub topics
- Updated
- 2026-10-06
- Lists
- 1 list mention
- First commit
- 2015-08-04
- License
- GPL-3.0
- Issues
- 301 open
1,495
stars
- Forks
- 693
- Commits
- 7,141 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
hail-is/hail
Cloud-native genomic dataframes and batch computing
AI dev
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2015-07-24
- License
- MIT
- Issues
- 399 open
1,080
stars
- Forks
- 266
- Commits
- 12,281 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
bcbio/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
- Updated
- 2024-08-24
- Lists
- 2 list mentions
- First commit
- 2010-07-24
- License
- MIT
- Issues
- 133 open
1,031
stars
- Forks
- 354
- Commits
- 8,579 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
insitro/redun
Yet another redundant workflow engine
GitHub topics
- Updated
- 2026-07-17
- Lists
- 1 list mention
- First commit
- 2021-10-08
- License
- Apache-2.0
- Issues
- 34 open
605
stars
- Forks
- 53
- Commits
- 511 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
openvax/pyensembl
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
AI dev
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2014-04-14
- License
- Apache-2.0
- Issues
- 4 open
410
stars
- Forks
- 74
- Commits
- 803 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
cokelaer/bioservices
Access to Biological Web Services from Python.
- Updated
- 2026-06-12
- Lists
- 1 list mention
- First commit
- 2012-11-28
- License
- NOASSERTION
- Issues
- 5 open
347
stars
- Forks
- 70
- Commits
- 1,521 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
daler/gffutils
GFF and GTF file manipulation and interconversion
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2011-09-18
- License
- MIT
- Issues
- 22 open
321
stars
- Forks
- 82
- Commits
- 768 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
adamewing/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
AI dev
- Updated
- 2026-08-05
- Lists
- 1 list mention
- First commit
- 2012-05-10
- License
- MIT
- Issues
- 42 open
253
stars
- Forks
- 87
- Commits
- 647 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
biodatageeks/polars-bio
Blazing-Fast Bioinformatic Operations on Python DataFrames
AI dev
GitHub topics
- Updated
- 2026-10-21
- Lists
- 2 list mentions
- First commit
- 2024-11-26
- License
- Apache-2.0
- Issues
- 52 open
205
stars
- Forks
- 35
- Commits
- 302 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
ljdursi/poapy
A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
- Updated
- 2024-06-20
- Lists
- 1 list mention
- First commit
- 2015-04-28
- License
- GPL-3.0
- Issues
- 0 open
77
stars
- Forks
- 12
- Commits
- 48 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
gogetdata/ggd-cli
The command-line interface to GGD
- Updated
- 2022-10-16
- Lists
- 1 list mention
- First commit
- 2016-04-22
- License
- MIT
- Issues
- 4 open
43
stars
- Forks
- 3
- Commits
- 524 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%