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Awesome Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
danielecook/Awesome-Bioinformatics
#awesome
#awesome-list
#bioinformatics
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- 4,329
- README repos
- 132
- Indexed repos
- 127
- List commits
- 273
- Forks
- 742
- Open issues
- 46
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Latest scan 2026-10-22 10:49
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broadinstitute/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
GitHub topics
- Updated
- 2026-10-14
- Lists
- 1 list mention
- First commit
- 2015-04-17
- License
- BSD-3-Clause
- Issues
- 816 open
1,085
stars
- Forks
- 382
- Commits
- 5,820 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
biojava/biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
GitHub topics
- Updated
- 2026-09-29
- Lists
- 1 list mention
- First commit
- 2009-09-15
- License
- LGPL-2.1
- Issues
- 70 open
634
stars
- Forks
- 400
- Commits
- 7,058 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
pcingola/SnpEff
Genomic variant annotation and functional effect prediction
AI dev
- Updated
- 2026-03-09
- Lists
- 1 list mention
- First commit
- 2014-01-31
- License
- NOASSERTION
- Issues
- 21 open
313
stars
- Forks
- 86
- Commits
- 2,752 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
broadgsa/gatk
Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
- Updated
- 2018-08-22
- Lists
- 1 list mention
- First commit
- 2009-02-26
- License
- Unknown
- Issues
- Disabled
303
stars
- Forks
- 219
- Commits
- 14,533 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
PapenfussLab/gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suite
- Updated
- 2025-05-21
- Lists
- 1 list mention
- First commit
- 2013-08-27
- License
- NOASSERTION
- Issues
- 95 open
286
stars
- Forks
- 73
- Commits
- 2,281 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
SeqWare/seqware
This is the SeqWare Project's main repo.
- Updated
- 2018-07-09
- Lists
- 1 list mention
- First commit
- 2012-05-11
- License
- GPL-3.0
- Issues
- 5 open
30
stars
- Forks
- 17
- Commits
- 3,206 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%