Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
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A powerful toolset for genome arithmetic.
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
The public CGAL repository, see the README below
Tools (written in C using htslib) for manipulating next-generation sequencing data
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Note: tabix and bgzip binaries are now part of the HTSlib project.
