bcbio/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Genomic variant annotation and functional effect prediction
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Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
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Scalable gVCF merging and joint variant calling for population sequencing projects
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
:zap: :aquarius: Rapid prokaryotic genome annotation
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl