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Awesome Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
danielecook/Awesome-Bioinformatics
#awesome
#awesome-list
#bioinformatics
- List stars
- 4,329
- README repos
- 132
- Indexed repos
- 127
- List commits
- 273
- Forks
- 742
- Open issues
- 46
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pcingola/BigDataScript
BigDataScript: Scirpting language for big data
Stack
- Updated
- 2021-03-31
- Lists
- 1 list mention
- First commit
- 2013-03-03
- License
- Unknown
- Issues
- 11 open
- Forks
- 20
- Commits
- 2,360 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
samtools/tabix
Note: tabix and bgzip binaries are now part of the HTSlib project.
Archived
- Updated
- 2021-08-03
- Lists
- 1 list mention
- First commit
- 2009-11-01
- License
- Unknown
- Issues
- 7 open
92
stars
- Forks
- 37
- Commits
- 86 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
vigsterkr/circos
Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.
Stack
- Updated
- 2018-10-29
- Lists
- 1 list mention
- First commit
- 2010-10-13
- License
- Unknown
- Issues
- 4 open
91
stars
- Forks
- 31
- Commits
- 5 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
arq5x/grabix
a wee tool for random access into BGZF files.
Stack
- Updated
- 2018-05-10
- Lists
- 1 list mention
- First commit
- 2012-05-22
- License
- MIT
- Issues
- 17 open
86
stars
- Forks
- 12
- Commits
- 60 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
zd1/telseq
A software for calculating telomere length
Stack
- Updated
- 2018-10-24
- Lists
- 1 list mention
- First commit
- 2013-05-27
- License
- GPL-3.0
- Issues
- 15 open
78
stars
- Forks
- 30
- Commits
- 81 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
ljdursi/poapy
A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
- Updated
- 2024-06-20
- Lists
- 1 list mention
- First commit
- 2015-04-28
- License
- GPL-3.0
- Issues
- 0 open
77
stars
- Forks
- 12
- Commits
- 48 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
chmille4/Scribl
HTML5 canvas genomic graphics library
Stack
- Updated
- 2019-05-06
- Lists
- 1 list mention
- First commit
- 2010-10-30
- License
- Unknown
- Issues
- 15 open
76
stars
- Forks
- 13
- Commits
- 213 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
drio/dnaism
Horizon chart js library for DNA data.
- Updated
- 2016-04-30
- Lists
- 1 list mention
- First commit
- 2013-12-31
- License
- NOASSERTION
- Issues
- 0 open
62
stars
- Forks
- 7
- Commits
- 102 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
Rbfinch/grepq
quickly filter fastq files by matching sequences to a set of regex patterns
GitHub topics
- Updated
- 2026-10-18
- Lists
- 1 list mention
- First commit
- 2024-11-03
- License
- MIT
- Issues
- 5 open
60
stars
- Forks
- 2
- Commits
- 333 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
arq5x/cyvcf
A fast Python library for VCF files leveraging Cython for speed.
- Updated
- 2018-03-27
- Lists
- 1 list mention
- First commit
- 2012-04-12
- License
- MIT
- Issues
- 12 open
54
stars
- Forks
- 14
- Commits
- 84 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
jonathancrabtree/Circleator
Flexible circular visualization of genome-associated data with BioPerl and SVG.
Stack
- Updated
- 2019-06-18
- Lists
- 1 list mention
- First commit
- 2013-09-20
- License
- NOASSERTION
- Issues
- 19 open
- Forks
- 8
- Commits
- 123 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
gogetdata/ggd-cli
The command-line interface to GGD
- Updated
- 2022-10-16
- Lists
- 1 list mention
- First commit
- 2016-04-22
- License
- MIT
- Issues
- 4 open
43
stars
- Forks
- 3
- Commits
- 524 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
IQTLabs/squiggle
📈 DNA Sequence Visualization for Humans
Archived
GitHub topics
- Updated
- 2021-07-10
- Lists
- 1 list mention
- First commit
- 2018-07-04
- License
- MIT
- Issues
- 7 open
41
stars
- Forks
- 9
- Commits
- 191 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
fmalmeida/ngs-preprocess
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
- Updated
- 2024-06-30
- Lists
- 1 list mention
- First commit
- 2019-09-19
- License
- GPL-3.0
- Issues
- 4 open
- Forks
- 7
- Commits
- 272 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
brentp/gsort
sort genomic data
Stack
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2016-04-15
- License
- MIT
- Issues
- 3 open
36
stars
- Forks
- 2
- Commits
- 33 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
lairdm/islandplot
SVG based genome viewer written in javascript using D3
Stack
- Updated
- 2015-07-12
- Lists
- 1 list mention
- First commit
- 2013-11-06
- License
- GPL-2.0
- Issues
- 1 open
33
stars
- Forks
- 26
- Commits
- 104 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
SeqWare/seqware
This is the SeqWare Project's main repo.
- Updated
- 2018-07-09
- Lists
- 1 list mention
- First commit
- 2012-05-11
- License
- GPL-3.0
- Issues
- 5 open
30
stars
- Forks
- 17
- Commits
- 3,206 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
shenwei356/easy_qsub
Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
- Updated
- 2023-05-24
- Lists
- 1 list mention
- First commit
- 2015-03-09
- License
- MIT
- Issues
- 1 open
29
stars
- Forks
- 8
- Commits
- 32 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
zzhofict/BWA-FastAlign
Fast alignment tool based on bwa-mem
Stack
- Updated
- 2026-02-22
- Lists
- 1 list mention
- First commit
- 2025-01-14
- License
- MIT
- Issues
- 7 open
- Forks
- 2
- Commits
- 15 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
broadinstitute/wdl
Workflow Description Language - Specification and Implementations
Archived
- Updated
- 2019-03-19
- Lists
- 1 list mention
- First commit
- 2012-08-01
- License
- BSD-3-Clause
- Issues
- Disabled
27
stars
- Forks
- 5
- Commits
- 384 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
wormtable/wormtable
Write-once-read-many table for large datasets.
- Updated
- 2023-10-05
- Lists
- 1 list mention
- First commit
- 2012-10-27
- License
- LGPL-3.0
- Issues
- 11 open
27
stars
- Forks
- 5
- Commits
- 540 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
TimoLassmann/samstat
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
GitHub topics
- Updated
- 2026-10-21
- Lists
- 1 list mention
- First commit
- 2014-06-12
- License
- NOASSERTION
- Issues
- 1 open
25
stars
- Forks
- 6
- Commits
- 354 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
incertae-sedis/smof
Explore and analyze biological sequence data
GitHub topics
- Updated
- 2024-08-01
- Lists
- 1 list mention
- First commit
- 2014-04-27
- License
- MIT
- Issues
- 0 open
19
stars
- Forks
- 3
- Commits
- 583 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
chgibb/PHAT
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Stack
GitHub topics
- Updated
- 2022-12-12
- Lists
- 1 list mention
- First commit
- 2016-10-11
- License
- GPL-3.0
- Issues
- 76 open
17
stars
- Forks
- 2
- Commits
- 5,236 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
DarwinAwardWinner/mergesam
Automate common sam & bam conversions
Stack
- Updated
- 2013-04-25
- Lists
- 1 list mention
- First commit
- 2011-07-31
- License
- Unknown
- Issues
- 0 open
- Forks
- 1
- Commits
- 20 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
pentalpha/r-peridot
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
Stack
- Updated
- 2019-10-15
- Lists
- 1 list mention
- First commit
- 2017-04-27
- License
- NOASSERTION
- Issues
- 0 open
- Forks
- 0
- Commits
- 109 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%
AndersenLab/bam-toolbox
A bam toolbox
- Updated
- 2024-07-30
- Lists
- 1 list mention
- First commit
- 2015-10-28
- License
- MIT
- Issues
- 0 open
- Forks
- 1
- Commits
- 49 commits
- Star growth, last 7 days
- 0 0.0%
- Commit velocity, last 7 days
- 0 0.0%