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CGAT-ruffus is a lightweight python module for running computational pipelines

A powerful toolset for genome arithmetic.

python access to UCSC genomes database

:rocket: seqfu - Sequece Fastx Utilities

SKESA assembler

OCaml Bioinformatics Library

An imagemagick-like frontend to Biopython SeqIO

Simple FASTQ quality assessment using Python

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

:mount_fuji: Fuji plot—a circos representation of multiple GWAS results— :mount_fuji:

BigDataScript: Scirpting language for big data

Note: tabix and bgzip binaries are now part of the HTSlib project.

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

a wee tool for random access into BGZF files.

A software for calculating telomere length

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

HTML5 canvas genomic graphics library

Horizon chart js library for DNA data.

quickly filter fastq files by matching sequences to a set of regex patterns

A fast Python library for VCF files leveraging Cython for speed.

Flexible circular visualization of genome-associated data with BioPerl and SVG.

The command-line interface to GGD

📈 DNA Sequence Visualization for Humans

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

sort genomic data

SVG based genome viewer written in javascript using D3

This is the SeqWare Project's main repo.

Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.

Fast alignment tool based on bwa-mem

Workflow Description Language - Specification and Implementations