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17 repos shown

Topic: bioinformatics

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Put your repository first

Promote a GitHub repo at the top of Awesome repository list views for 7 days.

K-Dense-AI/scientific-agent-skills

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

AI dev

Stack

Python pytest pip uv

GitHub topics

#agent-skills #ai-scientist #bioinformatics #chemoinformatics #claude #claude-skills

Updated: 2026-10-15
Lists: 1 list mention
First commit: 2025-10-19
History: 15 history points
License: MIT
Issues: 43 open

51,618

stars

Forks: 4,571
Commits: 760 commits
Star growth, last 7 days: +3,309 +6.8%
Commit velocity, last 7 days: +1 +0.1%

Website GitHub

plotly/dash

Data Apps & Dashboards for Python. No JavaScript Required.

AI dev

Stack

Python Celery FastAPI Flask pytest npm pip Yarn

GitHub topics

#ai #bioinformatics #charting #dash #dashboards #data-science

Updated: 2026-10-15
Lists: 4 list mentions
First commit: 2015-04-10
History: 8 history points
License: MIT
Issues: 433 open

24,456

stars

Forks: 2,329
Commits: 10,295 commits
Star growth, last 7 days: 0 0.0%
Commit velocity, last 7 days: 0 0.0%

Website GitHub

biopython/biopython

Official git repository for Biopython (originally converted from CVS)

Stack

Python pip uv

GitHub topics

#bioinformatics #biopython #dna #genomics #phylogenetics #protein

Updated: 2026-09-04
Lists: 1 list mention
First commit: 1999-12-08
History: 10 history points
License: NOASSERTION
Issues: 608 open

5,189

stars

Forks: 1,945
Commits: 16,335 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

synthetic-sciences/openscience

The open-source AI workbench for scientific research

AI dev

Stack

TypeScript Electron pytest React Tailwind CSS Bun npm PEP 517

GitHub topics

#agent #ai #ai-agent #ai-scientist #bioinformatics #bun

Updated: 2026-09-10
Lists: 1 list mention
First commit: 2026-07-04
History: 1 history point
License: Apache-2.0
Issues: 21 open

3,548

stars

Forks: 472
Commits: 773 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

galaxyproject/galaxy

Data intensive science for everyone.

AI dev

Stack

Python Celery FastAPI PydanticAI pytest npm PEP 517 pip

GitHub topics

#bioinformatics #dna #genomics #hacktoberfest #ngs #pipeline

Updated: 2026-10-10
Lists: 1 list mention
First commit: 2006-11-15
History: 5 history points
License: NOASSERTION
Issues: 2,724 open

1,868

stars

Forks: 1,178
Commits: 97,299 commits
Star growth, last 7 days: 0 0.0%
Commit velocity, last 7 days: 0 0.0%

Website GitHub

ClawBio/ClawBio

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

AI dev

Stack

Python FastAPI Flask pip uv

GitHub topics

#ai-agents #bioinformatics #equity #genomics #local-first #openclaw

Updated: 2026-09-06
Lists: 1 list mention
First commit: 2026-02-25
History: 7 history points
License: NOASSERTION
Issues: 26 open

1,126

stars

Forks: 260
Commits: 1,390 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

danforthcenter/plantcv

Plant phenotyping with image analysis

Stack

Python pytest PEP 517 pip

GitHub topics

#bioinformatics #image-analysis #plant-phenotyping #plantcv #science

Updated: 2026-09-17
Lists: 1 list mention
First commit: 2014-03-08
History: 5 history points
License: MPL-2.0
Issues: 84 open

824

stars

Forks: 298
Commits: 9,538 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

GitHub

cafferychen777/mLLMCelltype

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

AI dev

Stack

Python Flask pytest PEP 517 pip

GitHub topics

#bioinformatics #cell-type-annotation #computational-biology #consensus-algorithm #large-language-models #llm

Updated: 2026-09-28
Lists: 1 list mention
First commit: 2025-04-07
History: 7 history points
License: MIT
Issues: 9 open

662

stars

Forks: 59
Commits: 525 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

genomoncology/biomcp

BioMCP: Biomedical Model Context Protocol

AI dev

Stack

Rust Axum pytest Cargo PEP 517 uv

GitHub topics

#ai #bioinformatics #clinical-trials #genomics #llm #mcp

Updated: 2026-09-16
Lists: 1 list mention
First commit: 2025-04-01
History: 9 history points
License: MIT
Issues: 3 open

633

stars

Forks: 115
Commits: 3,844 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

Martinsos/edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Stack

C++ CMake Meson pip

GitHub topics

#alignment-path #bioinformatics #c-plus-plus #edit-distance #levehnstein-distance #library

Updated: 2025-05-13
Lists: 1 list mention
First commit: 2014-01-19
History: 3 history points
License: MIT
Issues: 68 open

607

stars

Forks: 174
Commits: 262 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

ababaian/serratus

Ultra-deep search for novel viruses

Stack

Jupyter Notebook pip

GitHub topics

#aws #bioinformatics #coronavirus #covid19 #open-science #sars-cov-2

Updated: 2023-03-29
Lists: 1 list mention
First commit: 2020-03-02
History: 8 history points
License: GPL-3.0
Issues: 40 open

277

stars

Forks: 35
Commits: 895 commits
Star growth, last 7 days: 0 0.0%
Commit velocity, last 7 days: 0 0.0%

Website GitHub

globalbioticinteractions/globalbioticinteractions

Global Biotic Interactions provides access to existing species interaction datasets

Stack

Java Maven

GitHub topics

#biodiversity #bioinformatics #biology #diet #diseases #ecoinformatics

Updated: 2026-10-14
Lists: 1 list mention
First commit: 2011-09-28
History: 8 history points
License: GPL-3.0
Issues: 444 open

145

stars

Forks: 17
Commits: 5,251 commits
Star growth, last 7 days: 0 0.0%
Commit velocity, last 7 days: 0 0.0%

Website GitHub

10XGenomics/enclone

VDJ Clonotyping & Analysis Tools

Stack

Rust Cargo

GitHub topics

#bioinformatics

Updated: 2025-03-07
Lists: 1 list mention
First commit: 2020-01-06
History: 5 history points
License: NOASSERTION
Issues: 4 open

stars

Forks: 15
Commits: 1,467 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

cafferychen777/ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

AI dev

Stack

Python pytest PEP 517 pip

GitHub topics

#agentic-ai #bioinformatics #cell-communication #claude-desktop #computational-biology #deconvolution

Updated: 2026-08-15
Lists: 1 list mention
First commit: 2025-05-06
History: 9 history points
License: MIT
Issues: 13 open

stars

Forks: 13
Commits: 1,003 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

connerlambden/bgpt-mcp

Scientific paper evidence search for ChatGPT, MCP, REST, Python, and AI agents.

AI dev

Stack

JavaScript Express npm

GitHub topics

#ai #ai-agents #arxiv #bioinformatics #evidence-synthesis #literature-review

Updated: 2026-07-06
Lists: 1 list mention
First commit: 2026-02-17
History: 7 history points
License: MIT
Issues: 4 open

stars

Forks: 9
Commits: 22 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

ammawla/encode-toolkit

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

AI dev

Stack

Python pytest npm PEP 517

GitHub topics

#ai #ai-agents #ai-bio #bioinformatics #bioinformatics-tool #claude

Updated: 2026-07-26
Lists: 1 list mention
First commit: 2026-03-08
History: 9 history points
License: AGPL-3.0
Issues: 2 open

stars

Forks: 5
Commits: 53 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

GitHub

hlydecker/ucsc-genome-mcp

An MCP server to interact with the UCSC Genome Browser API

Stack

Python PEP 517 pip

GitHub topics

#bioinformatics #genetics #mcp #mcp-server

Updated: 2025-11-13
Lists: 1 list mention
First commit: 2025-11-13
History: 8 history points
License: MIT
Issues: 0 open

stars

Forks: 4
Commits: 11 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

GitHub

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